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hdac8 histone deacetylase 8 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100145561, updated on 29-Apr-2017
Official Symbol
hdac8provided by Xenbase
Official Full Name
histone deacetylase 8provided by Xenbase
Primary source
Xenbase:XB-GENE-5863426
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
HD8
Orthologs
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (16416020..16431318, complement)
102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668241.1 (16707046..16761303, complement)

Chromosome 8 - NC_030684.1Genomic Context describing neighboring genes Neighboring gene phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like Neighboring gene cyclin-O protein B-like Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 Neighboring gene cyclin-O protein B-like Neighboring gene cyclin-O protein B-like

Homology

Preferred Names
histone deacetylase 8
NP_001120462.1
XP_012823478.1
XP_012823480.1
XP_012823481.1
XP_012823482.1
XP_017951649.1
XP_017951650.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126990.1NP_001120462.1  histone deacetylase 8

    See identical proteins and their annotated locations for NP_001120462.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161282
    UniProtKB/Swiss-Prot
    B1H369
    Conserved Domains (1) summary
    cd10000
    Location:7369
    HDAC8; Histone deacetylase 8 (HDAC8)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_tropicalis_v9.1 Primary Assembly

Genomic

  1. NC_030684.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Range
    16416020..16431318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968027.2XP_012823481.1  histone deacetylase 8 isoform X3

    See identical proteins and their annotated locations for XP_012823481.1

    Conserved Domains (1) summary
    cd10000
    Location:3325
    HDAC8; Histone deacetylase 8 (HDAC8)
  2. XM_012968026.2XP_012823480.1  histone deacetylase 8 isoform X2

    See identical proteins and their annotated locations for XP_012823480.1

    Conserved Domains (1) summary
    cd10000
    Location:1338
    HDAC8; Histone deacetylase 8 (HDAC8)
  3. XM_012968028.2XP_012823482.1  histone deacetylase 8 isoform X3

    See identical proteins and their annotated locations for XP_012823482.1

    Conserved Domains (1) summary
    cd10000
    Location:3325
    HDAC8; Histone deacetylase 8 (HDAC8)
  4. XM_012968024.2XP_012823478.1  histone deacetylase 8 isoform X2

    See identical proteins and their annotated locations for XP_012823478.1

    Conserved Domains (1) summary
    cd10000
    Location:1338
    HDAC8; Histone deacetylase 8 (HDAC8)
  5. XM_018096160.1XP_017951649.1  histone deacetylase 8 isoform X1

  6. XM_018096161.1XP_017951650.1  histone deacetylase 8 isoform X4

RNA

  1. XR_001171464.2 RNA Sequence

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