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znf236 zinc finger protein 236 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144676, updated on 8-Mar-2024

Summary

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Official Symbol
znf236provided by Xenbase
Official Full Name
zinc finger protein 236provided by Xenbase
Primary source
Xenbase:XB-GENE-996915
See related
Ensembl:ENSXETG00000010789
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
znf236a; znf236b
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
34
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (98968148..99043065, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683375.1 (417080..494928, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene galanin receptor 1 Neighboring gene myelin basic protein Neighboring gene zinc finger protein 516 Neighboring gene teashirt zinc finger homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 236

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    98968148..99043065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012965378.3 → XP_012820832.1  zinc finger protein 236 isoform X1

    UniProtKB/TrEMBL
    A0A1B8YA55, A0A6I8SXD1
    Related
    ENSXETP00000097862.2, ENSXETT00000103253.2
    Conserved Domains (5) summary
    COG5048
    Location:981 → 1292
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:197 → 217
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:585 → 605
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:195 → 217
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1840 → 1865
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012965379.3 → XP_012820833.1  zinc finger protein 236 isoform X2

    UniProtKB/TrEMBL
    A0A1B8YA55, A0A803K3Q0
    Related
    ENSXETP00000114974.1, ENSXETT00000109708.1
    Conserved Domains (5) summary
    COG5048
    Location:972 → 1283
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:188 → 208
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:576 → 596
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:186 → 208
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1831 → 1856
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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