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ttll4 tubulin tyrosine ligase like 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100144652, updated on 8-Mar-2024

Summary

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Official Symbol
ttll4provided by Xenbase
Official Full Name
tubulin tyrosine ligase like 4provided by Xenbase
Primary source
Xenbase:XB-GENE-492394
See related
Ensembl:ENSXETG00000013887
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
19
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (83097438..83118616, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (77801597..77823223, complement)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 3 Neighboring gene protein kinase, AMP-activated, gamma 3 non-catalytic subunit Neighboring gene cyclin Pas1/PHO80 domain containing 1 Neighboring gene ATP binding cassette subfamily B member 6 (Langereis blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables tubulin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables tubulin-glutamic acid ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein modification process IEA
Inferred from Electronic Annotation
more info
  
involved_in protein polyglutamylation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cilium IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
tubulin polyglutamylase TTLL4
Names
tubulin tyrosine ligase-like family, member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    83097438..83118616 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002933944.5 → XP_002933990.3  tubulin polyglutamylase TTLL4

    UniProtKB/TrEMBL
    A0A6I8PV51
    Related
    ENSXETP00000059115.3, ENSXETT00000063960.3
    Conserved Domains (1) summary
    pfam03133
    Location:612 → 905
    TTL; Tubulin-tyrosine ligase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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