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LINC00029 long intergenic non-protein coding RNA 29 [ Homo sapiens (human) ]

Gene ID: 100144596, updated on 13-May-2022

Summary

Official Symbol
LINC00029provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 29provided by HGNC
Primary source
HGNC:HGNC:16184
See related
AllianceGenome:HGNC:16184
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf51; NCRNA00029
Expression
Restricted expression toward testis (RPKM 2.7) See more
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Genomic context

See LINC00029 in Genome Data Viewer
Location:
20q13.33
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (63034217..63037028, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64835829..64838604, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61665569..61668380, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix family member e23 Neighboring gene long intergenic non-protein coding RNA 1749 Neighboring gene uncharacterized LOC105372718 Neighboring gene long intergenic non-protein coding RNA 1056 Neighboring gene highly accelerated region 1B Neighboring gene highly accelerated region 1A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028295.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AA609342, AL117533, AL121673, BC069708, BC134343

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    63034217..63037028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    64835829..64838604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_022099.3: Suppressed sequence

    Description
    NM_022099.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.