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zgc:171489 zgc:171489 [ Danio rerio (zebrafish) ]

Gene ID: 100142644, updated on 8-Dec-2018

Summary

Official Symbol
zgc:171489provided by ZNC
Official Full Name
zgc:171489provided by ZNC
Primary source
ZFIN:ZDB-GENE-080303-25
See related
Ensembl:ENSDARG00000052300
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio

Genomic context

See zgc:171489 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (58455428..58468835)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (58400647..58414054)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene short chain dehydrogenase/reductase family 42E, member 2 Neighboring gene cerebellar degeneration-related protein 2a Neighboring gene si:ch211-165g14.1 Neighboring gene un-named sa1261

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
organic substance transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100142644

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001122620.1NP_001116092.1  uncharacterized protein LOC100142644

    See identical proteins and their annotated locations for NP_001116092.1

    Status: PREDICTED

    Source sequence(s)
    BC159107
    UniProtKB/TrEMBL
    B0JZB2
    Related
    ENSDARP00000068618.4, ENSDART00000074129.6
    Conserved Domains (1) summary
    pfam13347
    Location:10449
    MFS_2; MFS/sugar transport protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    58455428..58468835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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