U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

USP13 ubiquitin specific peptidase 13 [ Bos taurus (domestic cattle) ]

Gene ID: 100141289, updated on 30-Jan-2025
Official Symbol
USP13provided by VGNC
Official Full Name
ubiquitin specific peptidase 13provided by VGNC
Primary source
VGNC:VGNC:52841
See related
BGD:BT16694; EnsemblRapid:ENSBTAG00070004409
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See USP13 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (87351245..87482165, complement)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene peroxisomal biogenesis factor 5 like Neighboring gene uncharacterized LOC112447548 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene NADH:ubiquinone oxidoreductase subunit B5 Neighboring gene mitochondrial ribosomal protein L47 Neighboring gene actin like 6A

Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

Related articles in PubMed

  1. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Bovine Genome Sequencing and Analysis Consortium, et al. Science, 2009 Apr 24. PMID 19390049, Free PMC Article
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ubiquitin carboxyl-terminal hydrolase 13
Names
Deubiquitinating enzyme 13
Ubiquitin thioesterase 13
Ubiquitin-specific-processing protease 13
ubiquitin specific peptidase 13 (isopeptidase T-3)
NP_001178195.1
XP_015327854.1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191266.2 → NP_001178195.1  ubiquitin carboxyl-terminal hydrolase 13

    See identical proteins and their annotated locations for NP_001178195.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000001
    UniProtKB/Swiss-Prot
    E1BMF7
    UniProtKB/TrEMBL
    A0AAA9SMR1
    Related
    ENSBTAP00070005773.1, ENSBTAT00070010034.1
    Conserved Domains (4) summary
    cd02658
    Location:337 → 859
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14384
    Location:652 → 700
    UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
    cd14386
    Location:728 → 769
    UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    pfam02148
    Location:211 → 284
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    87351245..87482165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015472368.3 → XP_015327854.1  ubiquitin carboxyl-terminal hydrolase 13 isoform X1

    UniProtKB/TrEMBL
    A0AAA9T7R1
    Conserved Domains (4) summary
    cd02658
    Location:284 → 806
    Peptidase_C19B; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cd14384
    Location:599 → 647
    UBA1_UBP13; UBA1 domain found in ubiquitin carboxyl-terminal hydrolase 13 (UBP13)
    cd14386
    Location:675 → 716
    UBA2_UBP5; UBA2 domain found in ubiquitin carboxyl-terminal hydrolase 5 (UBP5)
    pfam02148
    Location:158 → 231
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1BMF7.2 GenPept UniProtKB/Swiss-Prot:E1BMF7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.