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HMGB1 high mobility group box 1 [ Papio anubis (olive baboon) ]

Gene ID: 100137373, updated on 8-Mar-2024

Summary

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Gene symbol
HMGB1
Gene description
high mobility group box 1
See related
Ensembl:ENSPANG00000007200
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Papio anubis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Papio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
104 current Panubis1.0 (GCF_008728515.1) 15 NC_044990.1 (9436042..9443199, complement)
103 previous assembly Panu_3.0 (GCF_000264685.3) 17 NC_018168.2 (9555059..9559749, complement)

Chromosome 15 - NC_044990.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110741669 Neighboring gene ubiquitin conjugating enzyme E2 L5 Neighboring gene uncharacterized LOC108582841 Neighboring gene pre-mRNA-splicing factor RBM22 pseudogene Neighboring gene tyrosine-protein phosphatase non-receptor type 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding, bending IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein B1
Names
HMG-1
high mobility group protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001168909.1 → NP_001162380.1  high mobility group protein B1

    See identical proteins and their annotated locations for NP_001162380.1

    Status: PROVISIONAL

    Source sequence(s)
    DP000511
    UniProtKB/Swiss-Prot
    A9RA84
    UniProtKB/TrEMBL
    A0A2K6EE41
    Related
    ENSPANP00000006640.2, ENSPANT00000009297.3
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain

RefSeqs of Annotated Genomes: Papio anubis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Panubis1.0 Primary Assembly

Genomic

  1. NC_044990.1 Reference Panubis1.0 Primary Assembly

    Range
    9436042..9443199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009191722.2 → XP_009189986.2  high mobility group protein B1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6EE41, A0A8Q3SQL9
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain

  2. XM_009191720.2 → XP_009189984.2  high mobility group protein B1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6EE41, A0A8Q3SQL9
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain

  3. XM_009191721.4 → XP_009189985.2  high mobility group protein B1 isoform X1

    UniProtKB/TrEMBL
    A0A2K6EE41, A0A8Q3SQL9
    Conserved Domains (2) summary
    pfam00505
    Location:95 → 162
    HMG_box; HMG (high mobility group) box
    pfam09011
    Location:6 → 78
    HMG_box_2; HMG-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A9RA84.1 GenPept UniProtKB/Swiss-Prot:A9RA84

Gene LinkOut

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