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zgc:174193 zgc:174193 [ Danio rerio (zebrafish) ]

Gene ID: 100137109, updated on 9-Apr-2018
Official Symbol
zgc:174193provided by ZNC
Official Full Name
zgc:174193provided by ZNC
Primary source
ZFIN:ZDB-GENE-080215-8
See related
Ensembl:ENSDARG00000111633
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
See zgc:174193 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (9521741..9542927)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (34270883..34276377)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene si:dkey-19p15.4 Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 152 Neighboring gene novel protein similar to vertebrate pim family oncogene Neighboring gene protein-O-mannose kinase Neighboring gene WD repeat domain 32

  • Apoptosis, organism-specific biosystem (from KEGG)
    Apoptosis, organism-specific biosystemApoptosis is a genetically programmed process for the elimination of damaged or redundant cells by activation of caspases (aspartate-specific cysteine proteases). The onset of apoptosis is controlled...
  • Apoptosis, conserved biosystem (from KEGG)
    Apoptosis, conserved biosystemApoptosis is a genetically programmed process for the elimination of damaged or redundant cells by activation of caspases (aspartate-specific cysteine proteases). The onset of apoptosis is controlled...

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
Preferred Names
uncharacterized protein LOC100137109

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114706.1NP_001108178.1  uncharacterized protein LOC100137109

    See identical proteins and their annotated locations for NP_001108178.1

    Status: PREDICTED

    Source sequence(s)
    BC155125
    UniProtKB/TrEMBL
    A9JSY1
    Related
    ENSDARP00000124506.1, ENSDART00000137666.3
    Conserved Domains (2) summary
    cd00987
    Location:102186
    PDZ_serine_protease; PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind ...
    pfam13365
    Location:161
    Trypsin_2; Trypsin-like peptidase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    9521741..9542927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394866.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    182124..203310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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