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zgc:171426 zgc:171426 [ Danio rerio (zebrafish) ]

Gene ID: 100137103, updated on 1-Aug-2018

Summary

Official Symbol
zgc:171426provided by ZNC
Official Full Name
zgc:171426provided by ZNC
Primary source
ZFIN:ZDB-GENE-080212-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio

Genomic context

See zgc:171426 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
34
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (3469654..3481765)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (3687360..3699511)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:dkey-46g23.5 Neighboring gene zgc:165453 Neighboring gene zmp:0000000896 Neighboring gene CDC42 effector protein (Rho GTPase binding) 1b

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pregnancy zone protein; uncharacterized protein LOC100137103

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    3469654..3481765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354907.2XP_017210396.1  pregnancy zone protein

    Conserved Domains (7) summary
    COG2373
    Location:1481086
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:9771252
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:759847
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:147239
    A2M_N; MG2 domain
    pfam07677
    Location:13721461
    A2M_recep; A-macroglobulin receptor
    pfam07678
    Location:10291252
    A2M_comp; A-macroglobulin complement component
    pfam07703
    Location:484628
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001114700.1: Suppressed sequence

    Description
    NM_001114700.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from cow: A2M (GeneID:513856).
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