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prss1 serine protease 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 100137024, updated on 30-Nov-2023

Summary

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Gene symbol
prss1
Gene description
serine protease 1
See related
Ensembl:ENSSSAG00000086355
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
trp-iii; Trypsin-3
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Genomic context

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See prss1 in Genome Data Viewer
Location:
chromosome: ssa05
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (69207186..69208820, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (67313989..67315478, complement)

Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106605597 Neighboring gene zinc finger protein 135-like Neighboring gene C-type lectin domain family 4 member E Neighboring gene trypsin-3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of anionic and cationic variants of trypsin from Atlantic salmon. Male R, et al. Eur J Biochem, 1995 Sep 1. PMID 7556223
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trypsin-3
Names
trypsin III

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059446.1 Reference Ssal_v3.1

    Range
    69207186..69208820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014201411.2 → XP_014056886.1  trypsin-3

    UniProtKB/Swiss-Prot
    P35033
    UniProtKB/TrEMBL
    A0A1S3RXB1
    Related
    ENSSSAP00000005761.1, ENSSSAT00000006169.2
    Conserved Domains (2) summary
    smart00020
    Location:24 → 240
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:25 → 243
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P35033.1 GenPept UniProtKB/Swiss-Prot:P35033

Gene LinkOut

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Molecular Biology Databases
Research Materials