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ahr2a aryl hydrocarbon receptor 2 alpha [ Salmo salar (Atlantic salmon) ]

Gene ID: 100136911, updated on 9-Jun-2017

Summary

Gene symbol
ahr2a
Gene description
aryl hydrocarbon receptor 2 alpha
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo

Genomic context

See ahr2a in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (48523002..48594637)

Chromosome ssa21 - NC_027320.1Genomic Context describing neighboring genes Neighboring gene Glycophorin-C Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial-like Neighboring gene aryl hydrocarbon receptor-like Neighboring gene major histocompatibility complex class I-related gene protein-like

Genomic regions, transcripts, and products

Genomic Sequence:
NC_027320.1 Chromosome ssa21 Reference ICSASG_v2 Primary Assembly

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
aryl hydrocarbon receptor 2 alpha

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123684.1NP_001117156.1  aryl hydrocarbon receptor 2 alpha

    See identical proteins and their annotated locations for NP_001117156.1

    Status: PROVISIONAL

    Source sequence(s)
    AY219864
    UniProtKB/TrEMBL
    Q6XPT2
    Conserved Domains (5) summary
    smart00091
    Location:113175
    PAS; PAS domain
    cd00083
    Location:3576
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:298378
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:110225
    PAS; PAS fold
    pfam08447
    Location:298378
    PAS_3; PAS fold

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ICSASG_v2 Primary Assembly

Genomic

  1. NC_027320.1 Reference ICSASG_v2 Primary Assembly

    Range
    48523002..48594637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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