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zgc:171446 zgc:171446 [ Danio rerio (zebrafish) ]

Gene ID: 100136837, updated on 1-Aug-2018

Summary

Official Symbol
zgc:171446provided by ZNC
Official Full Name
zgc:171446provided by ZNC
Primary source
ZFIN:ZDB-GENE-080205-1
See related
Ensembl:ENSDARG00000116005 Vega:OTTDARG00000023221
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio

Genomic context

See zgc:171446 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
34
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (3402225..3413669, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (3619972..3631416, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:dkey-46g23.1 Neighboring gene si:dkey-46g23.2 Neighboring gene zgc:171445 Neighboring gene si:dkey-46g23.5

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100136837

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114556.1NP_001108028.1  uncharacterized protein LOC100136837

    See identical proteins and their annotated locations for NP_001108028.1

    Status: PREDICTED

    Source sequence(s)
    BC154440
    UniProtKB/TrEMBL
    A8WFS6
    Related
    ENSDARP00000100695.2, OTTDARP00000024618, ENSDART00000115331.4, OTTDART00000030204
    Conserved Domains (7) summary
    COG2373
    Location:1471074
    YfaS; Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]
    cd02897
    Location:9651240
    A2M_2; Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester ...
    pfam00207
    Location:747835
    A2M; Alpha-2-macroglobulin family
    pfam01835
    Location:146237
    A2M_N; MG2 domain
    pfam07677
    Location:13591448
    A2M_recep; A-macroglobulin receptor
    pfam07678
    Location:10171240
    A2M_comp; A-macroglobulin complement component
    pfam07703
    Location:481625
    A2M_N_2; Alpha-2-macroglobulin family N-terminal region

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    3402225..3413669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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