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LOC100136420 lysozyme g [ Salmo salar (Atlantic salmon) ]

Gene ID: 100136420, updated on 30-Nov-2023

Summary

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Gene symbol
LOC100136420
Gene description
lysozyme g
See related
Ensembl:ENSSSAG00000053544
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
LYG; lysg
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Genomic context

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See LOC100136420 in Genome Data Viewer
Location:
chromosome: ssa05
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (43665541..43667187, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (41754271..41755789, complement)

Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene LON peptidase N-terminal domain and RING finger protein 3 Neighboring gene CB055 protein Neighboring gene iduronate 2-sulfatase-like Neighboring gene AF4/FMR2 family member 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiles of some immune relevant genes from skin of susceptible and responding Atlantic salmon (Salmo salar L.) infected with Gyrodactylus salaris (Monogenea) revealed by suppressive subtractive hybridisation. Matejusová I, et al. Int J Parasitol, 2006 Sep. PMID 16806223
  2. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  3. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysozyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-positive bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidoglycan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysozyme g
Names
goose-type lysozyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059446.1 Reference Ssal_v3.1

    Range
    43665541..43667187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014200130.2 → XP_014055605.1  lysozyme g isoform X1

    UniProtKB/TrEMBL
    A6PZ97, B5XDU9
    Related
    ENSSSAP00000164584.1, ENSSSAT00000199140.1
    Conserved Domains (2) summary
    COG0741
    Location:48 → 175
    MltE; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell wall/membrane/envelope biogenesis]
    cd01021
    Location:35 → 198
    GEWL; Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese ...

  2. XM_014200131.2 → XP_014055606.1  lysozyme g isoform X2

    UniProtKB/TrEMBL
    A0A1S3RTI0, B5XDU9
    Related
    ENSSSAP00000055146.2, ENSSSAT00000084701.2
    Conserved Domains (2) summary
    COG0741
    Location:33 → 160
    MltE; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell wall/membrane/envelope biogenesis]
    cd01021
    Location:20 → 183
    GEWL; Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese ...

  3. XM_014200132.2 → XP_014055607.1  lysozyme g isoform X3

    UniProtKB/TrEMBL
    A0A1S3RUT8, B5XDU9
    Conserved Domains (2) summary
    COG0741
    Location:28 → 155
    MltE; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell wall/membrane/envelope biogenesis]
    cd01021
    Location:15 → 178
    GEWL; Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese ...
Nucleotide Protein
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