SCD5 stearoyl-CoA desaturase 5 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: SCD5provided by VGNC
Official Full Name: stearoyl-CoA desaturase 5provided by VGNC
Primary source: VGNC:VGNC:92617
See related: Ensembl:ENSSSCG00000009245 RGD:14008631
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression: Biased expression in ovary (RPKM 20.6), lung (RPKM 6.2) and 3 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	8	NC_010450.4 (135507346..135634031)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	8	NC_010450.3 (144868201..145004015)

Chromosome 8 - NC_010450.4 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that the mRNA expression of SCD5 is greatest in the brain.
Title: Comparison of pig, sheep and chicken SCD5 homologs: Evidence for an early gene duplication event.

Submit: New GeneRIF Correction

General gene information

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Markers

SEC31A (e-PCR)
- UniSTS:503457

SGC32186 (e-PCR)
- UniSTS:2257

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in lipid metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: stearoyl-CoA desaturase 5

NP_001107750.1

EC 1.14.19.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114278.1 → NP_001107750.1 stearoyl-CoA desaturase 5

See identical proteins and their annotated locations for NP_001107750.1

Status: PROVISIONAL

Source sequence(s)

EU344745

UniProtKB/TrEMBL

A0A4X1TFD0, A0A8D0NAZ6, B0FPB3, F1RVD3

Related

ENSSSCP00000009859.2, ENSSSCT00000010125.4

Conserved Domains (2) summary

cd03505
Location:73 → 313

Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...

pfam00487
Location:79 → 281

FA_desaturase; Fatty acid desaturase