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LOC100134391 uncharacterized LOC100134391 [ Homo sapiens (human) ]

Gene ID: 100134391, updated on 10-Dec-2024

Summary

Gene symbol
LOC100134391
Gene description
uncharacterized LOC100134391
See related
Ensembl:ENSG00000234721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LOC100134391 in Genome Data Viewer
Location:
17q25.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (73737854..73756557)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (74628397..74647138)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (71733993..71752696)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sidekick cell adhesion molecule 2 Neighboring gene uncharacterized LOC101928251 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71530725-71531437 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71533005-71533777 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71536899-71537463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71542356-71542892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71544460-71544960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71544961-71545461 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71556405-71557010 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71557011-71557617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71560304-71560804 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:71561780-71562370 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71562371-71562960 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71563551-71564139 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71584531-71585034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71585035-71585539 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71585540-71586043 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr17:71586044-71586548 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71591289-71591834 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71608178-71608714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71621555-71622080 Neighboring gene uncharacterized LOC124904054 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71649316-71649844 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:71682138-71682716 Neighboring gene NANOG hESC enhancer GRCh37_chr17:71731954-71732466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71763520-71764020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766371-71766872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71766873-71767372 Neighboring gene long intergenic non-protein coding RNA 469 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71793394-71793894 Neighboring gene long intergenic non-protein coding RNA 2092 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71816259-71816880 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:71817072-71817648 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:71824013-71824522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71825513-71826014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71826015-71826514 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71839003-71839503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71853558-71854172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71854173-71854786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71873696-71874196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71874197-71874697 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:71902449-71902950 Neighboring gene MPRA-validated peak2991 silencer Neighboring gene uncharacterized LOC107985081 Neighboring gene uncharacterized LOC105371888

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_164140.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC032019, AC125421
    Related
    ENST00000583854.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    73737854..73756557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    74628397..74647138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)