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XNDC1N XRCC1 N-terminal domain containing 1, N-terminal like [ Homo sapiens (human) ]

Gene ID: 100133315, updated on 11-Sep-2021

Summary

Official Symbol
XNDC1Nprovided by HGNC
Official Full Name
XRCC1 N-terminal domain containing 1, N-terminal likeprovided by HGNC
Primary source
HGNC:HGNC:54661
See related
Ensembl:ENSG00000254469
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See XNDC1N in Genome Data Viewer
Location:
11q13.4
Exon count:
8
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (71865509..71928594, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (71576555..71639505, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 342 Neighboring gene defensin beta 130C (pseudogene) Neighboring gene defensin beta 131B Neighboring gene olfactory receptor family 7 subfamily E member 128 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 126 pseudogene Neighboring gene ring finger protein 121 Neighboring gene interleukin 18 binding protein Neighboring gene nuclear mitotic apparatus protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough XNDC1N-ZNF705EP-ALG1L9P

Readthrough gene: XNDC1N-ZNF705EP-ALG1L9P, Included gene: ALG1L9P, Included gene: ZNF705EP

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in single strand break repair IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chromosome IDA
Inferred from Direct Assay
more info
 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
putative short transient receptor potential channel 2-like protein
Names
XRCC1 N-terminal domain containing 1-like protein
trpC2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001375847.2NP_001362776.1  putative short transient receptor potential channel 2-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AP002490, AP002495
    Related
    ENSP00000506430.1, ENST00000679412.2
    Conserved Domains (1) summary
    pfam01834
    Location:1150
    XRCC1_N; XRCC1 N terminal domain
  2. NM_001375848.2NP_001362777.1  putative short transient receptor potential channel 2-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AP002490, AP002495
    Conserved Domains (1) summary
    pfam01834
    Location:1150
    XRCC1_N; XRCC1 N terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    71865509..71928594 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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