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FAM27C family with sequence similarity 27 member C [ Homo sapiens (human) ]

Gene ID: 100132948, updated on 10-Dec-2024

Summary

Official Symbol
FAM27Cprovided by HGNC
Official Full Name
family with sequence similarity 27 member Cprovided by HGNC
Primary source
HGNC:HGNC:23668
See related
Ensembl:ENSG00000231527 AllianceGenome:HGNC:23668
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM27A; FAM27A1; FAM27A3; bA7G23.5
Expression
Broad expression in testis (RPKM 7.3), kidney (RPKM 2.3) and 23 other tissues See more
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Genomic context

See FAM27C in Genome Data Viewer
Location:
9q13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (61854084..61855340)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (41649556..41650808, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (44990236..44991492)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 242 member D Neighboring gene RNA, 7SL, cytoplasmic 722, pseudogene Neighboring gene uncharacterized LOC105379807 Neighboring gene uncharacterized LOC102723678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:45003363-45004205 Neighboring gene family with sequence similarity 27 member E4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • family with sequence similarity 27, member A

Clone Names

  • FLJ36039, MGC11241

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027421.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391987
    Related
    ENST00000377542.4

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    61854084..61855340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    41649556..41650808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001024942.1: Suppressed sequence

    Description
    NM_001024942.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.