U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SHISAL2B shisa like 2B [ Homo sapiens (human) ]

Gene ID: 100132916, updated on 13-May-2022

Summary

Official Symbol
SHISAL2Bprovided by HGNC
Official Full Name
shisa like 2Bprovided by HGNC
Primary source
HGNC:HGNC:34236
See related
Ensembl:ENSG00000145642 AllianceGenome:HGNC:34236
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM159B
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in stomach (RPKM 2.5), pancreas (RPKM 0.8) and 3 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SHISAL2B in Genome Data Viewer
Location:
5q12.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (64690503..64718190)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (65510627..65538314)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (63986330..64014017)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12830 Neighboring gene mitochondrial ribosomal protein L49 pseudogene 1 Neighboring gene SREK1 interacting protein 1 Neighboring gene uncharacterized LOC124900985 Neighboring gene Sharpr-MPRA regulatory region 1989 Neighboring gene CWC27 spliceosome associated cyclophilin

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein shisa-like-2B
Names
family with sequence similarity 159 member B
membrane protein FAM159B

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164442.2NP_001157914.1  protein shisa-like-2B

    See identical proteins and their annotated locations for NP_001157914.1

    Status: VALIDATED

    Source sequence(s)
    BQ271827, BU785751, BU952508
    Consensus CDS
    CCDS47220.1
    UniProtKB/Swiss-Prot
    A6NKW6
    Related
    ENSP00000373726.5, ENST00000389074.6
    Conserved Domains (1) summary
    pfam13908
    Location:889
    Shisa; Wnt and FGF inhibitory regulator

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    64690503..64718190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    65510627..65538314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)