U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MSC-AS1 MSC antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100132891, updated on 23-Oct-2022

Summary

Official Symbol
MSC-AS1provided by HGNC
Official Full Name
MSC antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48724
See related
Ensembl:ENSG00000235531 AllianceGenome:HGNC:48724
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in urinary bladder (RPKM 4.5), gall bladder (RPKM 4.1) and 24 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See MSC-AS1 in Genome Data Viewer
Location:
8q13.3-q21.11
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (71843123..72056312)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (72278328..72491399)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (72755358..72968547)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986890 Neighboring gene U8 small nucleolar RNA Neighboring gene musculin Neighboring gene ribosomal protein S20 pseudogene 20 Neighboring gene transient receptor potential cation channel subfamily A member 1 Neighboring gene uncharacterized LOC124901962 Neighboring gene transient receptor potential cation channel subfamily A member 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Clone Names

  • FLJ53548

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033651.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an inferred alternate promoter and omits an exon, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AC016057, BF171746, BQ332273, DB161440
    Related
    ENST00000457356.9
  2. NR_033652.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC016057, AK304427

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    71843123..72056312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    72278328..72491399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)