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PAXIP1-AS2 PAXIP1 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 100132707, updated on 13-May-2022

Summary

Official Symbol
PAXIP1-AS2provided by HGNC
Official Full Name
PAXIP1 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:48958
See related
AllianceGenome:HGNC:48958
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PAXIP1OS
Expression
Ubiquitous expression in ovary (RPKM 6.9), spleen (RPKM 5.9) and 25 other tissues See more
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Genomic context

See PAXIP1-AS2 in Genome Data Viewer
Location:
7q36.2
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (154928517..154949490)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (156103794..156124767)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (154720227..154741200)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene dipeptidyl peptidase like 6 Neighboring gene Sharpr-MPRA regulatory region 9204 Neighboring gene uncharacterized LOC105375580 Neighboring gene uncharacterized LOC124901781 Neighboring gene PAXIP1 divergent transcript Neighboring gene PAX interacting protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • PAXIP1 opposite strand

Clone Names

  • FLJ18763, FLJ32047, AC093726.6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024476.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AK056609, AK311721, CA309060, N46174
  2. NR_024477.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several 3' exons, but has an alternate 3' exon, as compared to variant 1.
    Source sequence(s)
    AK056609, BC033053, CA309060, N46174

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    154928517..154949490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    156103794..156124767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)