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PGAM1P5 phosphoglycerate mutase 1 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100132594, updated on 25-Jan-2022

Summary

Official Symbol
PGAM1P5provided by HGNC
Official Full Name
phosphoglycerate mutase 1 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:42452
See related
Ensembl:ENSG00000257150 AllianceGenome:HGNC:42452
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See PGAM1P5 in Genome Data Viewer
Location:
12q22
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (95649255..95673999)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (96043031..96067775)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene methionyl aminopeptidase 2 Neighboring gene ubiquitin specific peptidase 44 Neighboring gene netrin 4 Neighboring gene uncharacterized LOC105369919 Neighboring gene RNA, U6 small nuclear 247, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study in Koreans identifies susceptibility loci for allergic nickel dermatitis.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_077225.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008128, BC022928
    Related
    ENST00000552554.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    95649255..95673999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_032716.1: Suppressed sequence

    Description
    NG_032716.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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