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NPIPB5 nuclear pore complex interacting protein family member B5 [ Homo sapiens (human) ]

Gene ID: 100132247, updated on 15-Aug-2021

Summary

Official Symbol
NPIPB5provided by HGNC
Official Full Name
nuclear pore complex interacting protein family member B5provided by HGNC
Primary source
HGNC:HGNC:37233
See related
Ensembl:ENSG00000243716
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in skin (RPKM 35.9), bone marrow (RPKM 26.2) and 24 other tissues See more
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Genomic context

See NPIPB5 in Genome Data Viewer
Location:
16p12.2
Exon count:
9
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (22506783..22536535)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (22518104..22547856)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 13B (pseudogene) Neighboring gene RRN3 pseudogene 3 Neighboring gene SMG1 pseudogene 1 Neighboring gene uncharacterized LOC105371131 Neighboring gene OTOA pseudogene 1 Neighboring gene uncharacterized LOC112268175

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ61599, MGC70907, DKFZp564D113

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
nuclear pore complex-interacting protein family member B5
Names
nuclear pore complex interacting protein related

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135865.3NP_001129337.1  nuclear pore complex-interacting protein family member B5

    See identical proteins and their annotated locations for NP_001129337.1

    Status: VALIDATED

    Source sequence(s)
    AC106788
    Consensus CDS
    CCDS45443.1
    UniProtKB/Swiss-Prot
    A8MRT5
    UniProtKB/TrEMBL
    B4E0Y1
    Related
    ENSP00000430633.1, ENST00000517539.5
    Conserved Domains (3) summary
    pfam06409
    Location:41302
    NPIP; Nuclear pore complex interacting protein (NPIP)
    pfam16496
    Location:10321123
    SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
    cl17068
    Location:141
    AFD_class_I; Adenylate forming domain, Class I superfamily
  2. NM_001395849.1NP_001382778.1  nuclear pore complex-interacting protein family member B5

    Status: VALIDATED

    Source sequence(s)
    AC106788
  3. NM_001395850.1NP_001382779.1  nuclear pore complex-interacting protein family member B5

    Status: VALIDATED

    Source sequence(s)
    AC106788
  4. NM_001395851.1NP_001382780.1  nuclear pore complex-interacting protein family member B5

    Status: VALIDATED

    Source sequence(s)
    AC106788

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    22506783..22536535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_017852933.1 Reference GRCh38.p13 PATCHES

    Range
    568502..598258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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