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LINC00271 long intergenic non-protein coding RNA 271 [ Homo sapiens (human) ]

Gene ID: 100131814, updated on 7-Jul-2018

Summary

Official Symbol
LINC00271provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 271provided by HGNC
Primary source
HGNC:HGNC:32526
See related
Ensembl:ENSG00000231028
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf217; NCRNA00271
Expression
Biased expression in thyroid (RPKM 1.3), kidney (RPKM 1.1) and 11 other tissues See more

Genomic context

See LINC00271 in Genome Data Viewer
Location:
6q23.3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (135497801..135716055)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (135818939..136011976)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1351 Neighboring gene Abelson helper integration site 1 Neighboring gene beta-transducin repeat containing E3 ubiquitin protein ligase pseudogene 1 Neighboring gene uncharacterized LOC105378013 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 Neighboring gene high mobility group box 1 pseudogene 17 Neighboring gene uncharacterized LOC105378012 Neighboring gene uncharacterized LOC101928326

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC040979, BC127001, EU130902
    Related
    ENST00000421378.2
  2. NR_152842.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035604, AL133319, AL133544
  3. NR_152843.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL133544, AL512426
  4. NR_152844.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035604, AL133544
  5. NR_152845.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL035604, AL133544, AL512426

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

    Range
    135497801..135716055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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