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LINC00887 long intergenic non-protein coding RNA 887 [ Homo sapiens (human) ]

Gene ID: 100131551, updated on 11-Sep-2022

Summary

Official Symbol
LINC00887provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 887provided by HGNC
Primary source
HGNC:HGNC:48574
See related
Ensembl:ENSG00000214145 AllianceGenome:HGNC:48574
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HEIRCC
Expression
Biased expression in adrenal (RPKM 3.6), esophagus (RPKM 0.3) and 1 other tissue See more
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Genomic context

See LINC00887 in Genome Data Viewer
Location:
3q29
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194301199..194312804, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196999030..197010648, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (194018988..194030593, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2036 Neighboring gene long intergenic non-protein coding RNA 2037 Neighboring gene long intergenic non-protein coding RNA 2048 Neighboring gene Sharpr-MPRA regulatory region 2488 Neighboring gene carboxypeptidase N subunit 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • high-expressed in renal cell carcinoma
  • linc-ATP13A4-8

Clone Names

  • FLJ30066

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024480.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117469, AI733313, BC113537
    Related
    ENST00000414120.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    194301199..194312804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    196999030..197010648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)