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SNAP25-AS1 SNAP25 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100131208, updated on 10-Oct-2023

Summary

Official Symbol
SNAP25-AS1provided by HGNC
Official Full Name
SNAP25 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44312
See related
Ensembl:ENSG00000227906 AllianceGenome:HGNC:44312
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 1.6), adrenal (RPKM 0.3) and 2 other tissues See more
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Genomic context

See SNAP25-AS1 in Genome Data Viewer
Location:
20p12.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (10023812..10219506, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (10066695..10262371, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (10004460..10200154, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101929348 Neighboring gene p21 (RAC1) activated kinase 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17539 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17540 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:9958069-9959268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12670 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:10028171-10028363 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:10029614-10030813 Neighboring gene PPARG activating RBM14 associated lncRNA 1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr20:10055014-10056213 Neighboring gene ankyrin repeat and EF-hand domain containing 1 Neighboring gene uncharacterized LOC105372524 Neighboring gene uncharacterized LOC124904959 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:10221152-10221653 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:10221654-10222154 Neighboring gene synaptosome associated protein 25 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:10281144-10282061 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:10322076-10322299 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 15 Neighboring gene ribosomal protein L23a pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • SNAP25 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040710.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK124961, AL109754, BF244758, DA318406
    Related
    ENST00000603542.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    10023812..10219506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    10066695..10262371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)