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ZNF594-DT ZNF594 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100130950, updated on 13-May-2022

Summary

Official Symbol
ZNF594-DTprovided by HGNC
Official Full Name
ZNF594 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55347
See related
Ensembl:ENSG00000261879 AllianceGenome:HGNC:55347
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 5.2), lymph node (RPKM 4.8) and 24 other tissues See more
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Genomic context

See ZNF594-DT in Genome Data Viewer
Location:
17p13.2
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (5192007..5236003)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (5085356..5129409)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (5095302..5139298)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ZNF232 antisense RNA 1 Neighboring gene zinc finger protein 232 Neighboring gene ubiquitin specific peptidase 6 Neighboring gene zinc finger protein 594 Neighboring gene SLP adaptor and CSK interacting membrane protein Neighboring gene rabaptin, RAB GTPase binding effector protein 1 Neighboring gene uncharacterized LOC105371505 Neighboring gene nucleoporin 88

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.
EBI GWAS Catalog

General gene information

Markers

Clone Names

  • FLJ11816

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034082.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087500, BC029580
  2. NR_152840.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087500
    Related
    ENST00000669386.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    5192007..5236003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    5085356..5129409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)