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PSORS1C3 psoriasis susceptibility 1 candidate 3 [ Homo sapiens (human) ]

Gene ID: 100130889, updated on 23-Nov-2021

Summary

Official Symbol
PSORS1C3provided by HGNC
Official Full Name
psoriasis susceptibility 1 candidate 3provided by HGNC
Primary source
HGNC:HGNC:17203
See related
MIM:618690
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRNA00196
Expression
Broad expression in duodenum (RPKM 1.5), gall bladder (RPKM 1.4) and 16 other tissues See more
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Genomic context

See PSORS1C3 in Genome Data Viewer
Location:
6p21.33
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (31173735..31186317, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (31141512..31154094, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene transcription factor 19 Neighboring gene POU5F1 5' regulatory region Neighboring gene POU class 5 homeobox 1 Neighboring gene HLA complex group 27 Neighboring gene major histocompatibility complex, class I, C

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study identifies 2 susceptibility Loci for Crohn's disease in a Japanese population.
EBI GWAS Catalog
A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.
EBI GWAS Catalog
Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.
EBI GWAS Catalog
Multiple loci are associated with white blood cell phenotypes.
EBI GWAS Catalog
The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Potential readthrough

Included gene: POU5F1

Other Names

  • psoriasis susceptibility 1 candidate 3 (non-protein coding)

Clone Names

  • AB023059.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026816.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC027945
  2. NR_152828.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050981
  3. NR_152829.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050982
  4. NR_152830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050983
  5. NR_152831.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050984
  6. NR_152832.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050985
  7. NR_152833.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050986
  8. NR_152834.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL662844, LC050987
  9. NR_152835.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050988
  10. NR_152836.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050989
  11. NR_152837.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050990
  12. NR_152838.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC050991
  13. NR_152839.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    LC027946

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    31173735..31186317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    2656176..2668769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_3

Genomic

  1. NT_167245.2 Reference GRCh38.p13 ALT_REF_LOCI_3

    Range
    2433068..2445657 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_4

Genomic

  1. NT_167246.2 Reference GRCh38.p13 ALT_REF_LOCI_4

    Range
    2484255..2496847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_5

Genomic

  1. NT_167247.2 Reference GRCh38.p13 ALT_REF_LOCI_5

    Range
    2517868..2530461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p13 ALT_REF_LOCI_6

    Range
    2431785..2444362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_7

Genomic

  1. NT_167249.2 Reference GRCh38.p13 ALT_REF_LOCI_7

    Range
    2477166..2489744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001134284.1: Suppressed sequence

    Description
    NM_001134284.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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