U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HDHD5-AS1 HDHD5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100130717, updated on 13-May-2022

Summary

Official Symbol
HDHD5-AS1provided by HGNC
Official Full Name
HDHD5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:1842
See related
Ensembl:ENSG00000185837 AllianceGenome:HGNC:1842
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CECR4; CECR5-AS1; NCRNA00017
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See HDHD5-AS1 in Genome Data Viewer
Location:
22q11.1
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (17159389..17165445)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (17835971..17842030)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (17640279..17646335)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene transmembrane protein 121B Neighboring gene long intergenic non-protein coding RNA 1664 Neighboring gene haloacid dehalogenase like hydrolase domain containing 5 Neighboring gene adenosine deaminase 2 Neighboring gene uncharacterized LOC107985573 Neighboring gene ribosomal protein L32 pseudogene 5

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • CECR5 antisense RNA 1 (non-protein coding)
  • cat eye syndrome chromosome region, candidate 4 (non-protein coding)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024482.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment, as compared to variant 1.
    Source sequence(s)
    AW293178, BI962745
    Related
    ENST00000329743.4
  2. NR_024483.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript.
    Source sequence(s)
    AC006946, AF307448
    Related
    ENST00000431923.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    17159389..17165445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    17835971..17842030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)