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CXorf49 chromosome X open reading frame 49 [ Homo sapiens (human) ]

Gene ID: 100130361, updated on 17-Jun-2024

Summary

Official Symbol
CXorf49provided by HGNC
Official Full Name
chromosome X open reading frame 49provided by HGNC
Primary source
HGNC:HGNC:30891
See related
Ensembl:ENSG00000215115 AllianceGenome:HGNC:30891
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf49B
Expression
Restricted expression toward testis (RPKM 3.0) See more
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Genomic context

See CXorf49 in Genome Data Viewer
Location:
Xq13.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (71714371..71718285, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (70147706..70151620, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (70934221..70938135, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene chromosome X open reading frame 49-like Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:70888661-70889860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20899 Neighboring gene long intergenic non-protein coding RNA 891 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene cytochrome c oxidase subunit NDUFA4-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
uncharacterized protein CXorf49

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145140.2NP_001138612.1  uncharacterized protein CXorf49

    See identical proteins and their annotated locations for NP_001138612.1

    Status: VALIDATED

    Source sequence(s)
    BX276092
    Consensus CDS
    CCDS75991.1
    UniProtKB/Swiss-Prot
    A8MYA2
    Related
    ENSP00000480355.1, ENST00000535490.3
    Conserved Domains (1) summary
    pfam15483
    Location:81506
    DUF4641; Domain of unknown function (DUF4641)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    71714371..71718285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    70147706..70151620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)