HMGA2-AS1 HMGA2 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: HMGA2-AS1provided by HGNC
Official Full Name: HMGA2 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:53973
See related: Ensembl:ENSG00000197301 AllianceGenome:HGNC:53973
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Low expression observed in reference dataset See more
Orthologs: all
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Genomic context

Location:: 12q14.3

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
110	current	GRCh38.p14 (GCF_000001405.40)	12	NC_000012.12 (65851227..65882325, complement)
110	current	T2T-CHM13v2.0 (GCF_009914755.1)	12	NC_060936.1 (65830729..65861850, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	12	NC_000012.11 (66245007..66276105, complement)

Chromosome 12 - NC_000012.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Meta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D12S1521 (e-PCR)
- UniSTS:18688

D12S1511 (e-PCR)
- UniSTS:610

D12S1555 (e-PCR)
- UniSTS:154097

D12S1556 (e-PCR)
- UniSTS:154098

Homology

Orthologs from Annotation Pipeline: 6 organisms have orthologs with human gene HMGA2-AS1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_120478.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (3) contains distinct exons compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.

Source sequence(s)

AY387665

Related

ENST00000504038.2
NR_158984.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AC090673

Related

ENST00000356215.5
NR_158985.1 RNA Sequence

Status: VALIDATED

Source sequence(s)

AC090673, AC107308