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HMGA2-AS1 HMGA2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100129940, updated on 25-Jan-2022

Summary

Official Symbol
HMGA2-AS1provided by HGNC
Official Full Name
HMGA2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53973
See related
Ensembl:ENSG00000197301 AllianceGenome:HGNC:53973
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See HMGA2-AS1 in Genome Data Viewer
Location:
12q14.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (65851227..65882325, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (66245007..66276105, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene PEST containing nuclear protein pseudogene 3 Neighboring gene ribosomal protein SA pseudogene 52 Neighboring gene high mobility group AT-hook 2 Neighboring gene Sharpr-MPRA regulatory region 11590 Neighboring gene HNF4 motif-containing MPRA enhancer 102

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Meta-analysis of genome-wide association studies in african americans provides insights into the genetic architecture of type 2 diabetes.
EBI GWAS Catalog

General gene information

Markers

Homology

Other Names

  • RP11-366L20.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120478.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains distinct exons compared to variant 1. This variant is represented as non-coding because it lacks the entire coding region found in variant 1.
    Source sequence(s)
    AY387665
    Related
    ENST00000504038.2
  2. NR_158984.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090673
    Related
    ENST00000356215.5
  3. NR_158985.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090673, AC107308

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    65851227..65882325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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