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PCGF3-AS1 PCGF3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100129917, updated on 13-May-2022

Summary

Official Symbol
PCGF3-AS1provided by HGNC
Official Full Name
PCGF3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:56108
See related
Ensembl:ENSG00000249592
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in thyroid (RPKM 3.5), prostate (RPKM 1.5) and 23 other tissues See more
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Genomic context

See PCGF3-AS1 in Genome Data Viewer
Location:
4p16.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (760443..781849, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (758236..779632, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (754231..775637, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene polycomb group ring finger 3 Neighboring gene uncharacterized LOC107986246 Neighboring gene uncharacterized LOC124900644 Neighboring gene chloride intracellular channel protein 6-like Neighboring gene uncharacterized LOC105374339 Neighboring gene complexin 1 Neighboring gene uncharacterized LOC105374340

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ27313, AC139887.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036511.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC139887, AK055583
  2. NR_036512.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate intron, compared to variant 1.
    Source sequence(s)
    AC139887
    Related
    ENST00000503185.5
  3. NR_171661.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC139887

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    760443..781849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    758236..779632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)