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IRAG1-AS1 IRAG1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100129827, updated on 13-May-2022

Summary

Official Symbol
IRAG1-AS1provided by HGNC
Official Full Name
IRAG1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:43434
See related
Ensembl:ENSG00000177112 AllianceGenome:HGNC:43434
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MRVI1-AS1
Expression
Biased expression in testis (RPKM 26.2) and endometrium (RPKM 1.5) See more
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Genomic context

See IRAG1-AS1 in Genome Data Viewer
Location:
11p15.4
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (10541236..10599932)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (10625747..10684457)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (10562783..10621479)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene MT-RNR2 like 8 (pseudogene) Neighboring gene microRNA 4485 Neighboring gene ring finger protein 141 Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene Sharpr-MPRA regulatory regions 8950 and 14430 Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • MRVI1 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034093.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two consecutive internal exons, compared to variant 1.
    Source sequence(s)
    AI075905, BU570065, DB071465
    Related
    ENST00000663840.1
  2. NR_034094.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two consecutive internal exons and uses an alternate splice site in the 3' region, compared to variant 1.
    Source sequence(s)
    BC028123, DB071465
    Related
    ENST00000529829.7
  3. NR_046374.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI075905, BI520309, DB071465
    Related
    ENST00000529979.6
  4. NR_046375.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AI075905, BU569149, DB071465
    Related
    ENST00000671658.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    10541236..10599932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    10625747..10684457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)