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ETDB embryonic testis differentiation homolog B [ Homo sapiens (human) ]

Gene ID: 100129515, updated on 10-Dec-2019

Summary

Official Symbol
ETDBprovided by HGNC
Official Full Name
embryonic testis differentiation homolog Bprovided by HGNC
Primary source
HGNC:HGNC:44269
See related
Ensembl:ENSG00000224107
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ETDA; LINC00633
Expression
Restricted expression toward testis (RPKM 5.6) See more
Orthologs

Genomic context

See ETDB in Genome Data Viewer
Location:
Xq26.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (135116145..135120588, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (134252881..134254405, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene nucleolin pseudogene 2 Neighboring gene small integral membrane protein 10 like 2B Neighboring gene SMIM10L2B antisense RNA 1 Neighboring gene zinc finger protein 449 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
uncharacterized protein LOC100129515
Names
long intergenic non-protein coding RNA 633

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355519.1NP_001342448.1  uncharacterized protein LOC100129515

    Status: VALIDATED

    Source sequence(s)
    AI015085, AY730280, BX106414
    Consensus CDS
    CCDS87781.1
    Related
    ENSP00000490943.1, ENST00000423661.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    135116145..135120588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024452314.1XP_024308082.1  uncharacterized protein LOC100129515 isoform X1

  2. XM_024452315.1XP_024308083.1  uncharacterized protein LOC100129515 isoform X2

  3. XM_024452316.1XP_024308084.1  uncharacterized protein LOC100129515 isoform X2

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