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LINC01546 long intergenic non-protein coding RNA 1546 [ Homo sapiens (human) ]

Gene ID: 100129464, updated on 2-Mar-2021

Summary

Official Symbol
LINC01546provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1546provided by HGNC
Primary source
HGNC:HGNC:27336
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
VAL; CXorf28
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01546 in Genome Data Viewer
Location:
Xp22.33
Exon count:
3
Annotation release Status Assembly Chr Location
109.20210226 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (3271820..3284653)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (3189861..3202694)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 578, pseudogene Neighboring gene arylsulfatase F Neighboring gene ribosomal protein S24 pseudogene 21 Neighboring gene matrix remodeling associated 5 Neighboring gene argininosuccinate synthetase 1 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • vimentin associated lncRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029783.1 RefSeqGene

    Range
    5001..17834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_038428.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX101503

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210226

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    3271820..3284653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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