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LYRM4-AS1 LYRM4 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100129461, updated on 23-Nov-2021

Summary

Official Symbol
LYRM4-AS1provided by HGNC
Official Full Name
LYRM4 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:52055
See related
Ensembl:ENSG00000272142
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.1), adrenal (RPKM 0.7) and 23 other tissues See more
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Genomic context

See LYRM4-AS1 in Genome Data Viewer
Location:
6p25.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (5003816..5240496)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (5004050..5240729)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene chromodomain Y like Neighboring gene uncharacterized LOC105374897 Neighboring gene ribosomal protein S18 pseudogene 8 Neighboring gene ribonuclease P/MRP subunit p40 Neighboring gene transcription factor B2, mitochondrial pseudogene Neighboring gene LYR motif containing 4 Neighboring gene protein phosphatase 1 regulatory subunit 3G Neighboring gene microRNA 3691 Neighboring gene Sharpr-MPRA regulatory region 4425 Neighboring gene phenylalanyl-tRNA synthetase 2, mitochondrial Neighboring gene FARS2 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126015.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AK094934, AL121978
  2. NR_126016.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two exons and contains an alternate 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AK094934, AL359643, CR736828
  3. NR_126017.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons and contains an alternate 3' terminal exon, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AK094934, AL359643, BE788607
    Related
    ENST00000663198.1
  4. NR_126018.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains a distinct exon structure, compared to variant 1, but shares the 3' terminal exon with variant 3. It is shorter than variant 1.
    Source sequence(s)
    AL359643, BC042032
    Related
    ENST00000654379.1
  5. NR_126019.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) contains a distinct exon structure, compared to variant 1, but shares the 3' terminal exon with variant 2. It is shorter than variant 1.
    Source sequence(s)
    AL359643, BC042032, BC133670
    Related
    ENST00000661740.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    5003816..5240496
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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