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FAM236A family with sequence similarity 235 member A [ Homo sapiens (human) ]

Gene ID: 100129407, updated on 25-Jan-2022

Summary

Official Symbol
FAM236Aprovided by HGNC
Official Full Name
family with sequence similarity 235 member Aprovided by HGNC
Primary source
HGNC:HGNC:44268
See related
Ensembl:ENSG00000275520 AllianceGenome:HGNC:44268
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00684; DMRTC1-AS1
Expression
Restricted expression toward testis (RPKM 50.5) See more
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Genomic context

See FAM236A in Genome Data Viewer
Location:
Xq13.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (72938206..72938958)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72158046..72158798)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene DMRT like family C1B Neighboring gene family with sequence similarity 236 member D Neighboring gene DMRT like family C1 Neighboring gene family with sequence similarity 236 member C Neighboring gene family with sequence similarity 226 member A Neighboring gene PABPC1L2B antisense RNA 1 (head to head)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General protein information

Preferred Names
protein FAM236A
Names
DMRTC1 antisense RNA 1 (non-protein coding)
long intergenic non-protein coding RNA 684

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001348070.2NP_001334999.1  protein FAM236A isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC234776
    Consensus CDS
    CCDS87765.1
    UniProtKB/Swiss-Prot
    A0A1B0GUQ0, A0A1B0GV22
    Related
    ENSP00000490343.2, ENST00000611003.2
  2. NM_001348071.2NP_001335000.1  protein FAM236A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC234776
    Consensus CDS
    CCDS87766.1
    UniProtKB/TrEMBL
    A0A1X7SCG6
    Related
    ENSP00000490197.1, ENST00000593662.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    72938206..72938958
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_034116.1: Suppressed sequence

    Description
    NR_034116.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
  2. NR_034117.1: Suppressed sequence

    Description
    NR_034117.1: This RefSeq was permanently suppressed because it was based on sequence from the wrong strand.
  3. NR_120499.1: Suppressed sequence

    Description
    NR_120499.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
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