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TDRD15 tudor domain containing 15 [ Homo sapiens (human) ]

Gene ID: 100129278, updated on 22-Sep-2022

Summary

Official Symbol
TDRD15provided by HGNC
Official Full Name
tudor domain containing 15provided by HGNC
Primary source
HGNC:HGNC:45037
See related
Ensembl:ENSG00000218819 AllianceGenome:HGNC:45037
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.5) See more
Orthologs
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Genomic context

See TDRD15 in Genome Data Viewer
Location:
2p24.1
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (21123932..21147325)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (21157174..21177571)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (21346840..21367240)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5245 Neighboring gene uncharacterized LOC124905593 Neighboring gene uncharacterized LOC124908055 Neighboring gene APOB intestinal control region Neighboring gene Sharpr-MPRA regulatory region 2464 Neighboring gene uncharacterized LOC105374317

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in P granule organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in piRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in P granule IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
tudor domain-containing protein 15
Names
tudor domain-containing protein 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001306137.2NP_001293066.1  tudor domain-containing protein 15

    See identical proteins and their annotated locations for NP_001293066.1

    Status: VALIDATED

    Source sequence(s)
    AC010872
    Consensus CDS
    CCDS77385.1
    UniProtKB/Swiss-Prot
    B5MCY1
    Related
    ENSP00000384376.2, ENST00000405799.3
    Conserved Domains (2) summary
    cd04508
    Location:13461393
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    pfam00567
    Location:479600
    TUDOR; Tudor domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    21123932..21147325
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011533212.2XP_011531514.1  tudor domain-containing protein 15 isoform X1

    See identical proteins and their annotated locations for XP_011531514.1

    UniProtKB/Swiss-Prot
    B5MCY1
    Conserved Domains (2) summary
    cd04508
    Location:13461393
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    pfam00567
    Location:479600
    TUDOR; Tudor domain

RNA

  1. XR_939798.3 RNA Sequence

  2. XR_001738578.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791767.1 Reference GRCh38.p14 PATCHES

    Range
    174636..195036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    21157174..21177571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)