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ERCC6L2-AS1 ERCC6L2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128782, updated on 13-May-2022

Summary

Official Symbol
ERCC6L2-AS1provided by HGNC
Official Full Name
ERCC6L2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27858
See related
Ensembl:ENSG00000175611 AllianceGenome:HGNC:27858
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NAG11; NAG12; C9orf130; LINC00476
Expression
Ubiquitous expression in prostate (RPKM 1.4), ovary (RPKM 1.4) and 25 other tissues See more
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Genomic context

See ERCC6L2-AS1 in Genome Data Viewer
Location:
9q22.32
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (95806088..95875977, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (107977446..108047347, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98568370..98638259, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8876 Neighboring gene uncharacterized LOC105376161 Neighboring gene uncharacterized LOC107987103 Neighboring gene Sharpr-MPRA regulatory region 9073 Neighboring gene uncharacterized LOC124902221 Neighboring gene Sharpr-MPRA regulatory region 6609 Neighboring gene RNA, U2 small nuclear 46, pseudogene Neighboring gene ERCC excision repair 6 like 2 Neighboring gene RNA, 5S ribosomal pseudogene 289 Neighboring gene PARK7 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 476
  • nasopharyngeal carcinoma-associated gene 12

Clone Names

  • FLJ34818, FLJ34826

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_023389.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at its 5' end, and includes alternate exon structure at its 3' end, compared to variant 1.
    Source sequence(s)
    AF194971, AL389954
    Related
    ENST00000321517.3
  2. NR_023390.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK092137, AK092145, AL354861, AL389954, BU687794

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    95806088..95875977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    107977446..108047347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)