U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RBPMS-AS1 RBPMS antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128750, updated on 17-Jun-2024

Summary

Official Symbol
RBPMS-AS1provided by HGNC
Official Full Name
RBPMS antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48721
See related
Ensembl:ENSG00000254109 AllianceGenome:HGNC:48721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TP53LC06
Expression
Ubiquitous expression in prostate (RPKM 9.9), kidney (RPKM 5.5) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See RBPMS-AS1 in Genome Data Viewer
Location:
8p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (30382119..30385401, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (30661006..30664288, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (30239635..30242917, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 84 Neighboring gene tubulin beta pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:30241844-30242514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30242515-30243186 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:30251401-30252099 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30252799-30253496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30254895-30255593 Neighboring gene Sharpr-MPRA regulatory region 541 Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene heart enhancer 24 Neighboring gene uncharacterized LOC112268025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30284105-30284606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30284607-30285106 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30295211-30295746 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30303831-30304359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:30304360-30304887 Neighboring gene Sharpr-MPRA regulatory region 3907 Neighboring gene NANOG hESC enhancer GRCh37_chr8:30310384-30310885 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:30318783-30319578 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:30333285-30333476 Neighboring gene uncharacterized LOC124901929

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046205.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA931221, AK057935, BM845627
    Related
    ENST00000517521.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    30382119..30385401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    30661006..30664288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)