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HPN-AS1 HPN antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128675, updated on 25-Jan-2022

Summary

Official Symbol
HPN-AS1provided by HGNC
Official Full Name
HPN antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:47041
See related
Ensembl:ENSG00000227392 AllianceGenome:HGNC:47041
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Note: The gene type is uncertain. There is scant homology support for predicted proteins and so the locus is represented as non-protein-coding at this time. [09 Dec 2008]
Expression
Biased expression in kidney (RPKM 1.7), liver (RPKM 1.7) and 7 other tissues See more
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Genomic context

See HPN-AS1 in Genome Data Viewer
Location:
19q13.11-q13.12
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (35059059..35106304, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (35549963..35597208, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 1A Neighboring gene sodium voltage-gated channel beta subunit 1 Neighboring gene hepsin Neighboring gene sushi, nidogen and EGF like domains 1 pseudogene Neighboring gene Fc gamma binding protein pseudogene Neighboring gene FXYD domain containing ion transport regulator 3 Neighboring gene microRNA 6887 Neighboring gene leucine rich repeat LGI family member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Discovery and fine mapping of serum protein loci through transethnic meta-analysis.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • CTD-2527I21.11

Clone Names

  • FLJ42789

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024561.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC020907
  2. NR_024562.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in two exons relative to variant 1 and is a shorter transcript.
    Source sequence(s)
    AC020907
    Related
    ENST00000392227.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    35059059..35106304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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