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C1GALT1P2 C1GALT1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100128603, updated on 17-Jun-2024

Summary

Official Symbol
C1GALT1P2provided by HGNC
Official Full Name
C1GALT1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:51615
See related
AllianceGenome:HGNC:51615
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See C1GALT1P2 in Genome Data Viewer
Location:
5q11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (56192368..56193835)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (57019940..57021407)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (55488195..55489662)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 55 Neighboring gene ribosomal protein L17 pseudogene 22 Neighboring gene CRISPRi-FlowFISH-validated IL6ST regulatory element GRCh37_chr5:55444297-55444797 Neighboring gene RNA, 5S ribosomal pseudogene 184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16019 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:55452705-55453500 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:55455891-55456686 Neighboring gene Sharpr-MPRA regulatory region 5241 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:55535983-55537182 Neighboring gene NANOG hESC enhancer GRCh37_chr5:55553446-55553953 Neighboring gene RNA, 5S ribosomal pseudogene 185 Neighboring gene proteasome 26S subunit, ATPase 1 pseudogene 4

Genomic regions, transcripts, and products

General gene information

Other Names

  • core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 2
  • core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 pseudogene
  • ore 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021881.2 

    Range
    21..1488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    56192368..56193835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    57019940..57021407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)