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SLC8A1-AS1 SLC8A1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128590, updated on 23-Nov-2021

Summary

Official Symbol
SLC8A1-AS1provided by HGNC
Official Full Name
SLC8A1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:44102
See related
Ensembl:ENSG00000227028
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in esophagus (RPKM 1.2), testis (RPKM 0.2) and 5 other tissues See more
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Genomic context

See SLC8A1-AS1 in Genome Data Viewer
Location:
2p22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (39917634..40255209)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (40144774..40482349)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 178A Neighboring gene THUMP domain containing 2 Neighboring gene uncharacterized LOC112268436 Neighboring gene zinc finger protein 19 pseudogene Neighboring gene Sharpr-MPRA regulatory region 6978 Neighboring gene solute carrier family 8 member A1 Neighboring gene Sharpr-MPRA regulatory region 14225 Neighboring gene uncharacterized LOC101929667

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.
EBI GWAS Catalog
Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
EBI GWAS Catalog
Genome-wide association study of neurocognitive impairment and dementia in HIV-infected adults.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • SLC8A1 antisense RNA 1 (non-protein coding)

Clone Names

  • AC007254.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038441.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007253, AC007254, AC007377
    Related
    ENST00000444629.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    39917634..40255209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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