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C19orf71 chromosome 19 open reading frame 71 [ Homo sapiens (human) ]

Gene ID: 100128569, updated on 27-Sep-2020

Summary

Official Symbol
C19orf71provided by HGNC
Official Full Name
chromosome 19 open reading frame 71provided by HGNC
Primary source
HGNC:HGNC:34496
See related
Ensembl:ENSG00000183397
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 11.5), kidney (RPKM 8.9) and 24 other tissues See more
Orthologs

Genomic context

See C19orf71 in Genome Data Viewer
Location:
19p13.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (3539157..3544030)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (3538674..3544121)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372245 Neighboring gene deoxyhypusine hydroxylase Neighboring gene fizzy and cell division cycle 20 related 1 Neighboring gene major facilitator superfamily domain containing 12 Neighboring gene high mobility group 20B Neighboring gene GIPC PDZ domain containing family member 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C19orf71

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135580.2NP_001129052.1  uncharacterized protein C19orf71

    See identical proteins and their annotated locations for NP_001129052.1

    Status: VALIDATED

    Source sequence(s)
    AI138384, BX396051, DY654838
    Consensus CDS
    CCDS45918.1
    UniProtKB/Swiss-Prot
    A6NCJ1
    Related
    ENSP00000327950.4, ENST00000329493.5
    Conserved Domains (1) summary
    pfam15041
    Location:23206
    DUF4531; Domain of unknown function (DUF4531)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    3539157..3544030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527596.3XP_011525898.1  uncharacterized protein C19orf71 isoform X1

    Conserved Domains (1) summary
    pfam15041
    Location:1153
    DUF4531; Domain of unknown function (DUF4531)
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