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HTR5A-AS1 HTR5A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128264, updated on 17-Sep-2024

Summary

Official Symbol
HTR5A-AS1provided by HGNC
Official Full Name
HTR5A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:48956
See related
Ensembl:ENSG00000220575 AllianceGenome:HGNC:48956
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HTR5AOS
Expression
Restricted expression toward brain (RPKM 2.6) See more
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Genomic context

See HTR5A-AS1 in Genome Data Viewer
Location:
7q36.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (155067067..155071557, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (156242667..156247155, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (154858777..154863267, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene PAX interacting protein 1 Neighboring gene uncharacterized LOC124901781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18839 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18841 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:154795729-154796230 Neighboring gene PAXIP1 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26890 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18843 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:154862583-154863409 Neighboring gene 5-hydroxytryptamine receptor 5A Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:154914484-154915093 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:154959387-154959888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:154959889-154960388 Neighboring gene uncharacterized LOC105375584 Neighboring gene RN7SK pseudogene 280

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • HTR5A opposite strand

Clone Names

  • FLJ50038, AC093726.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038945.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093726, BC031272, BC045795, DC407680
    Related
    ENST00000395731.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    155067067..155071557 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    156242667..156247155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)