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LOC100128164 four and a half LIM domains 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 100128164, updated on 23-Nov-2021

Summary

Gene symbol
LOC100128164
Gene description
four and a half LIM domains 1 pseudogene
See related
Ensembl:ENSG00000239219
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in heart (RPKM 1.2), testis (RPKM 0.8) and 21 other tissues See more
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Genomic context

See LOC100128164 in Genome Data Viewer
Location:
3q26.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (169943984..169966734, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (169661772..169684522, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene keratin 18 pseudogene 43 Neighboring gene sterile alpha motif domain containing 7 Neighboring gene FAM20B, glycosaminoglycan xylosylkinase pseudogene Neighboring gene SEC62 homolog, preprotein translocation factor Neighboring gene G protein-coupled receptor 160 Neighboring gene RNA, U4 small nuclear 38, pseudogene Neighboring gene KMT5A pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • FLJ41016, DKFZp313A137

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024409.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 3' exon, compared to variant 1.
    Source sequence(s)
    AK098335, CR748002
    Related
    ENST00000469301.1
  2. NR_027622.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC008040, AK098335, AL833309
    Related
    ENST00000483289.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    169943984..169966734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_025657.1: Suppressed sequence

    Description
    NG_025657.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
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