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JAZF1-AS1 JAZF1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128081, updated on 13-May-2022

Summary

Official Symbol
JAZF1-AS1provided by HGNC
Official Full Name
JAZF1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41218
See related
AllianceGenome:HGNC:41218
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in endometrium (RPKM 1.0), brain (RPKM 0.9) and 21 other tissues See more
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Genomic context

See JAZF1-AS1 in Genome Data Viewer
Location:
7p15.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (28180457..28241377)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (28317838..28378729)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (28220076..28280996)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene JAZF zinc finger 1 Neighboring gene VISTA enhancer hs1430 Neighboring gene RNA, U6 small nuclear 979, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr7:28330425-28331392 and GRCh37_chr7:28331393-28332360 Neighboring gene peptidylprolyl isomerase A pseudogene 80

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
EBI GWAS Catalog

General gene information

Other Names

  • JAZF1 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ59585, AC005017.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034097.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK293540, DB481568

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    28180457..28241377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    28317838..28378729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)