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C8orf88 chromosome 8 open reading frame 88 [ Homo sapiens (human) ]

Gene ID: 100127983, updated on 11-Jun-2021

Summary

Official Symbol
C8orf88provided by HGNC
Official Full Name
chromosome 8 open reading frame 88provided by HGNC
Primary source
HGNC:HGNC:44672
See related
Ensembl:ENSG00000253250
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 49.2), brain (RPKM 24.3) and 14 other tissues See more
Orthologs
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Genomic context

See C8orf88 in Genome Data Viewer
Location:
8q21.3
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (90958471..90985393, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (91970699..91997621, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375635 Neighboring gene N-terminal EF-hand calcium binding protein 1 Neighboring gene uncharacterized LOC105375634 Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 Neighboring gene OTUD6B antisense RNA 1 (head to head)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables eukaryotic initiation factor 4E binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translational initiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C8orf88

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190972.2NP_001177901.1  uncharacterized protein C8orf88

    See identical proteins and their annotated locations for NP_001177901.1

    Status: VALIDATED

    Source sequence(s)
    AC103770, BI562585, DA838443
    Consensus CDS
    CCDS59105.1
    UniProtKB/Swiss-Prot
    P0DMB2
    Related
    ENSP00000454561.1, ENST00000517562.3
  2. NM_001363275.2NP_001350204.1  uncharacterized protein C8orf88

    Status: VALIDATED

    Source sequence(s)
    AC087439, AC103770, DA838443
    Consensus CDS
    CCDS59105.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    90958471..90985393 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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