U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fut5 fucosyltransferase 5 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127585, updated on 9-Dec-2024

Summary

Official Symbol
fut5provided by Xenbase
Official Full Name
fucosyltransferase 5provided by Xenbase
Primary source
Xenbase:XB-GENE-5886482
See related
Ensembl:ENSXETG00000033979 AllianceGenome:Xenbase:XB-GENE-5886482
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable fucosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi cisterna membrane. Orthologous to human FUT3 (fucosyltransferase 3 (Lewis blood group)); FUT5 (fucosyltransferase 5); and FUT6 (fucosyltransferase 6). [provided by Alliance of Genome Resources, Dec 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See fut5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (24166252..24173661, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (14808948..14815507, complement)

Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene PRKC apoptosis WT1 regulator protein Neighboring gene alpha-(1,3)-fucosyltransferase 6 Neighboring gene von Willebrand factor C and EGF domains Neighboring gene transfer RNA alanine (anticodon AGC)

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in fucosylation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein glycosylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fucosyltransferase 5 (alpha (1,3) fucosyltransferase)

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112948.1NP_001106419.2  fucosyltransferase 5 (alpha (1,3) fucosyltransferase)

    Status: VALIDATED

    Source sequence(s)
    BC153357
    UniProtKB/TrEMBL
    A0A8J0Q996, A8E4W7
    Conserved Domains (2) summary
    pfam00852
    Location:188357
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:65172
    Glyco_tran_10_N; Fucosyltransferase, N-terminal

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    24166252..24173661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031899776.1XP_031755636.1  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q647, A8E4W7
    Related
    ENSXETP00000110431.1, ENSXETT00000113619.1
    Conserved Domains (2) summary
    pfam00852
    Location:186355
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:63170
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
  2. XM_031899777.1XP_031755637.1  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X2

    UniProtKB/TrEMBL
    A0A8J1JCN0, A8E4W7
    Conserved Domains (2) summary
    pfam00852
    Location:177346
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:54161
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
  3. XM_018092897.2XP_017948386.2  fucosyltransferase 5 (alpha (1,3) fucosyltransferase) isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q647, A8E4W7
    Related
    ENSXETP00000104262.1, ENSXETT00000121417.1
    Conserved Domains (2) summary
    pfam00852
    Location:186355
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:63170
    Glyco_tran_10_N; Fucosyltransferase, N-terminal