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ankrd17 ankyrin repeat domain 17 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127573, updated on 8-Mar-2024

Summary

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Official Symbol
ankrd17provided by Xenbase
Official Full Name
ankyrin repeat domain 17provided by Xenbase
Primary source
Xenbase:XB-GENE-994421
See related
Ensembl:ENSXETG00000008132
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
gtar; ny-br-16
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
36
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (80261257..80340312)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683393.1 (494451..573212)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene serum albumin 2 Neighboring gene serum albumin Neighboring gene cytochrome c oxidase assembly factor COX18 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    80261257..80340312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002940353.5 → XP_002940399.3  ankyrin repeat domain-containing protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RPE4, A0A6I8S1R4
    Related
    ENSXETP00000088846.2, ENSXETT00000080954.2
    Conserved Domains (8) summary
    PHA03095
    Location:242 → 603
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1837 → 2193
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:437 → 466
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2056 → 2360
    Atrophin-1; Atrophin-1 family
    pfam03938
    Location:788 → 894
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:307 → 397
    Ank_2; Ankyrin repeats (3 copies)
    cl00098
    Location:1724 → 1794
    KH-I; K homology (KH) RNA-binding domain, type I
    cl39094
    Location:1154 → 1440
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_018089479.2 → XP_017944968.2  ankyrin repeat domain-containing protein 17 isoform X2

    UniProtKB/TrEMBL
    A0A6I8RPE4, A0A8J0SQB5
    Conserved Domains (8) summary
    PHA03095
    Location:242 → 603
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1836 → 2192
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:437 → 466
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2055 → 2359
    Atrophin-1; Atrophin-1 family
    pfam03938
    Location:788 → 894
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:307 → 397
    Ank_2; Ankyrin repeats (3 copies)
    cd22502
    Location:1723 → 1793
    KH-I_ANKRD17; type I K homology (KH) RNA-binding domain found in ankyrin repeat domain-containing protein 17 (ANKRD17) and similar proteins
    cl39094
    Location:1153 → 1439
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_018089478.2 → XP_017944967.2  ankyrin repeat domain-containing protein 17 isoform X3

    UniProtKB/TrEMBL
    A0A6I8RPE4, A0A8J0SXD2
    Conserved Domains (8) summary
    PHA03095
    Location:242 → 599
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1836 → 2192
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:437 → 466
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2055 → 2359
    Atrophin-1; Atrophin-1 family
    pfam03938
    Location:787 → 893
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:307 → 397
    Ank_2; Ankyrin repeats (3 copies)
    cd22502
    Location:1723 → 1793
    KH-I_ANKRD17; type I K homology (KH) RNA-binding domain found in ankyrin repeat domain-containing protein 17 (ANKRD17) and similar proteins
    cl39094
    Location:1153 → 1439
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_031903292.1 → XP_031759152.1  ankyrin repeat domain-containing protein 17 isoform X4

    UniProtKB/TrEMBL
    A0A6I8RPE4, A0A8J1JMP0
    Conserved Domains (8) summary
    PHA03095
    Location:228 → 589
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1823 → 2179
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:423 → 452
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:2042 → 2346
    Atrophin-1; Atrophin-1 family
    pfam03938
    Location:774 → 880
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:293 → 383
    Ank_2; Ankyrin repeats (3 copies)
    cl00098
    Location:1710 → 1780
    KH-I; K homology (KH) RNA-binding domain, type I
    cl39094
    Location:1140 → 1426
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_004911071.4 → XP_004911128.2  ankyrin repeat domain-containing protein 17 isoform X6

    UniProtKB/TrEMBL
    A0A6I8RIE2, A0A8J0QVL1
    Conserved Domains (7) summary
    PHA03095
    Location:242 → 603
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1586 → 1942
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:437 → 466
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:1805 → 2109
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:307 → 397
    Ank_2; Ankyrin repeats (3 copies)
    cl00098
    Location:1473 → 1543
    KH-I; K homology (KH) RNA-binding domain, type I
    cl39094
    Location:903 → 1189
    Ank_2; Ankyrin repeats (3 copies)

  6. XM_004911072.4 → XP_004911129.2  ankyrin repeat domain-containing protein 17 isoform X7

    UniProtKB/TrEMBL
    A0A6I8RIE2, A0A8J0QZU4
    Conserved Domains (7) summary
    PHA03095
    Location:242 → 603
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1585 → 1941
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:437 → 466
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:1804 → 2108
    Atrophin-1; Atrophin-1 family
    pfam12796
    Location:307 → 397
    Ank_2; Ankyrin repeats (3 copies)
    cd22502
    Location:1472 → 1542
    KH-I_ANKRD17; type I K homology (KH) RNA-binding domain found in ankyrin repeat domain-containing protein 17 (ANKRD17) and similar proteins
    cl39094
    Location:902 → 1188
    Ank_2; Ankyrin repeats (3 copies)

  7. XM_031903293.1 → XP_031759153.1  ankyrin repeat domain-containing protein 17 isoform X5

    UniProtKB/TrEMBL
    A0A6I8RPE4, F6VQ54
    Related
    ENSXETP00000017818.4, ENSXETT00000017818.4
    Conserved Domains (8) summary
    PHA03095
    Location:127 → 488
    PHA03095; ankyrin-like protein; Provisional
    pfam05109
    Location:1722 → 2078
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    sd00045
    Location:322 → 351
    ANK; ANK repeat [structural motif]
    pfam03154
    Location:1941 → 2245
    Atrophin-1; Atrophin-1 family
    pfam03938
    Location:673 → 779
    OmpH; Outer membrane protein (OmpH-like)
    pfam12796
    Location:192 → 282
    Ank_2; Ankyrin repeats (3 copies)
    cd22502
    Location:1609 → 1679
    KH-I_ANKRD17; type I K homology (KH) RNA-binding domain found in ankyrin repeat domain-containing protein 17 (ANKRD17) and similar proteins
    cl39094
    Location:1039 → 1325
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

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