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snx25 sorting nexin 25 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100127563, updated on 8-Mar-2024

Summary

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Official Symbol
snx25provided by Xenbase
Official Full Name
sorting nexin 25provided by Xenbase
Primary source
Xenbase:XB-GENE-1001658
See related
Ensembl:ENSXETG00000031703
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (44501265..44596063, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (35260585..35334925, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene UFM1-specific peptidase 2 Neighboring gene ankyrin repeat domain 37 Neighboring gene LRP2 binding protein Neighboring gene cilia and flagella associated protein 97 Neighboring gene solute carrier family 25 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
sorting nexin-25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    44501265..44596063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031895428.1 → XP_031751288.1  sorting nexin-25 isoform X3

    UniProtKB/TrEMBL
    A0A6I8Q160, A0A8J1J0C1
    Related
    ENSXETP00000062797.3, ENSXETT00000064280.3
    Conserved Domains (4) summary
    cd06878
    Location:505 → 627
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:2 → 158
    PXA; PXA domain
    pfam08628
    Location:704 → 810
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:294 → 402
    RGS; Regulator of G protein signaling (RGS) domain superfamily

  2. XM_018095719.2 → XP_017951208.1  sorting nexin-25 isoform X2

    UniProtKB/TrEMBL
    A0A6I8S2L4, A0A8J0T4U1

  3. XM_004911182.4 → XP_004911239.1  sorting nexin-25 isoform X1

    UniProtKB/TrEMBL
    A0A6I8PXS4, A0A6I8S2L4
    Related
    ENSXETP00000060828.2, ENSXETT00000061433.3
    Conserved Domains (4) summary
    cd06878
    Location:715 → 837
    PX_SNX25; The phosphoinositide binding Phox Homology domain of Sorting Nexin 25
    pfam02194
    Location:212 → 368
    PXA; PXA domain
    pfam08628
    Location:914 → 1020
    Nexin_C; Sorting nexin C terminal
    cl02565
    Location:504 → 612
    RGS; Regulator of G protein signaling (RGS) domain superfamily
Nucleotide Protein Strain
Heading Accession and Version

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